Skype for Business not updating icons on start menu - Using OCT for Lync 2013 deployment

We're currently deploying Lync 2013 to out fleet using the OCT to customize where the shortcuts are created.

What we are finding is that the Skype for Business Patch does not update these icons.  It only updates the icons if they are in the default location (no OCT).

Is there a standalone Installer for Skype for Business we could apply a TRANSFORM to? Or some other method of updating all icons startmenu, taskbar etc.

Thanks